Characterization of pro-opiomelanocortin gene variants and their effect on carcass traits in beef cattle
Date
2009
Authors
Journal Title
Journal ISSN
Volume Title
Publisher
ORCID
Type
Degree Level
Masters
Abstract
Pro-opiomelanocortin is a prohormone that codes for many different peptides, some of which are involved in the appetite pathway. A single nucleotide polymorphism c.288C>T in pro-opiomelanocortin (POMC) was previously demonstrated to be associated with hot carcass weight (HCW) and shipping weight (Ship wt) in cattle. While developing a commercial real time PCR test for the POMC c.288C>T we identified a 12 bp deletion (POMC c.293_304delTTGGGGGCGCGG). The deletion results in the removal of four amino acids; valine, two glycine, and alanine. The deletion does not cause a frame shift. Both the POMC c.288C>T SNP and the deletion were genotyped in 386 crossbred steers, and evaluated for associations with carcass traits. The animals with one copy of the deletion had a significantly lower end-of-background rib-eye area (P=0.04) and carcass rib-eye area (P=0.03) when compared to animals without the deletion. A significant association with the POMC c.288C>T SNP was found with start of finishing weight (SOF WT); (P=0.04), HCW (P=0.02), average fat and grade fat (P=0.05), carcass rib-eye area (REA); (P=0.03) and marbling (P=0.02). These results suggest that it would be beneficial for beef producers to know both the deletion and the POMC c.288C>T SNP genotypes when making marketing and culling decisions.
Description
Keywords
POMC, cattle
Citation
Degree
Master of Science (M.Sc.)
Department
Animal and Poultry Science
Program
Animal and Poultry Science
Advisor
Buchanan, Fiona
Committee
Laarveld, Bernard;Shand, Phyllis;Schmutz, Sheila;Soita, Henry